| Contents |
Principles of model building : an experimentation-aided approach to development of models for signaling networks / Ambhighainath Ganesan, Andre Levchenko -- Integrated inference and analysis of regulatory networks from multi-level measurements / Christopher S. Poultney, Alex Greenfield, Richard Bonneau -- Swimming upstream : identifying proteomic signals that drive transciptional changes using the interactome and multiple "-Omics" datasets / Shao-shan Carol Huang, Ernest Fraenkel -- A framework for modeling the relationship between cellular steady-state and stimulus-responsiveness / Paul M. Loriaux, Alexander Hoffmann -- Stochastic modeling of cellular networks / Jacob Stewart-Ornstein, Hana el-Samad -- Quantifying traction stresses in adherent cells / Casey M. Kraning-Rush, Shawn P. Carey, Joseph P. Califano, Cynthia A. Reinhart-King -- CellOrganizer : image-derived models of subcellular organization and protein distribution / Robert F. Murphy -- Spatial modeling of cell signaling networks / Ann E. Cowan, Ion I. Moraru, James C. Schaff, Boris M. Slepchenko, Leslie M. Loew -- Stochastic models of cell protrusion arising from spatiotemporal signaling and adhesion dynamics / Erik S. Welf, Jason M. Haugh -- Nonparametric variable selection and modeling for spatial and temporal regulatory networks / Anil Aswani, Mark D. Biggin, Peter Bickel, Claire Tomlin -- Quantitative models of the mechanisms that control genome-wide patterns of animal transcription factor binding / Tommy Kaplan, Mark D. Biggin -- Computational analysis of live cell images of the arabidopsis thaliana plant / Alexandre Cunhua, Paul T. Tarr, Adrienne H.K. Roeder, Alphan Altinok, Eric Mjolsness, Elliott M. Meyerowtiz -- Multi-scale modeling of tissues using CompuCell3D / Maciej H. Swat, Gilberto L. Thomas, Julio M. Belmonte, Abbas Shirinifard, Dimitrij Hmeljak, James A. Glazier -- Multiscale model of fibrin accumulation on the blood clot surface and platelet dynamincs / Zhiliang Xu, Scott Christley, Joshua Lioi, Oleg Kim, Cameron Harvey, Wenzhao Sun, Elliot D. Rosen, Mark Alber. |
